BioMCP-TS MCP配置与使用教程

{
  "id": "io.github.yeyuan98/biomcp-ts",
  "type": "mcp-server",
  "version": "1.1.1",
  "displayName": "BioMCP-TS",
  "description": "Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.",
  "repository": {
    "url": "https://github.com/yeyuan98/biomcp-ts",
    "source": "github"
  },
  "homepage": "https://github.com/yeyuan98/biomcp-ts/blob/main/docs/AGENT-INSTALL.md",
  "distribution": {
    "packages": [
      {
        "registryType": "npm",
        "identifier": "biomcp",
        "version": "1.1.1",
        "runtimeHint": "npx",
        "transport": "stdio",
        "environmentVariables": [
          {
            "name": "ANALYSIS_BIOWASM",
            "description": "Set to 1 to enable the samtools/bedtools/bcftools biowasm analysis tools"
          },
          {
            "name": "ANALYSIS_R",
            "description": "Set to 1 to enable the R/Bioconductor analysis tools (requires the webr peer dependency; use the pinned one-shot client command)"
          },
          {
            "name": "DB_TYPE",
            "description": "Set to mysql or sqlite to enable the read-only SQL database tools"
          },
          {
            "name": "NCBI_API_KEY",
            "description": "Higher NCBI E-utilities rate limits (3 -> 10 req/s)",
            "isSecret": true
          },
          {
            "name": "S2_API_KEY",
            "description": "Higher Semantic Scholar rate limits",
            "isSecret": true
          },
          {
            "name": "OPENFDA_API_KEY",
            "description": "Higher OpenFDA rate limits",
            "isSecret": true
          },
          {
            "name": "ONCOKB_TOKEN",
            "description": "Required by the variant_oncokb tool (OncoKB annotations)",
            "isSecret": true
          },
          {
            "name": "DISGENET_API_KEY",
            "description": "Required for DisGeNET disease-gene associations",
            "isSecret": true
          }
        ]
      }
    ],
    "remotes": []
  },
  "dependencies": [],
  "installTargets": [
    "claude-code",
    "claude-desktop",
    "cursor",
    "vscode",
    "trae",
    "cherry-studio",
    "lingma",
    "windsurf",
    "cline",
    "workbuddy"
  ],
  "keywords": [],
  "provenance": {
    "origin": "official-mcp-registry",
    "originalId": "io.github.yeyuan98/biomcp-ts",
    "originalUrl": "https://registry.modelcontextprotocol.io/v0.1/servers/io.github.yeyuan98%2Fbiomcp-ts/versions/latest",
    "isOfficial": true,
    "status": "active"
  }
}