pysam(基因组文件处理)
io.github.K-Dense-AI/scientific-agent-skills/pysam
基于 Python/HTSlib 的基因组文件工作流。在使用 pysam 读取、查询、过滤或写出 SAM/BAM/CRAM、VCF/BCF、FASTA/FASTQ 或 tabix 数据时使用,包括 pileup、覆盖度、索引与 CRAM 参考。
“Local Files” 共 609 个结果
io.github.K-Dense-AI/scientific-agent-skills/pysam
基于 Python/HTSlib 的基因组文件工作流。在使用 pysam 读取、查询、过滤或写出 SAM/BAM/CRAM、VCF/BCF、FASTA/FASTQ 或 tabix 数据时使用,包括 pileup、覆盖度、索引与 CRAM 参考。
io.github.coollabsio/coolify/infer-conventions
Use this skill to analyze how a Laravel application is actually written and record its conventions as shared rules. Trigger when the user wants to detect, infer, document, or standardize project conventions or coding style, set up or grow `.ai/rules`, resolve mixed or conflicting patterns (e.g. "are we using Form Requests or inline validation?"), or onboard agents and teammates to "how we do things here". Covers: a systematic sweep of ~49 Laravel convention dimensions (validation, models, architecture, testing, frontend, database, console), open-ended house-pattern discovery, conflict reporting, and recording rules scoped to the right paths via the Boost `record-rule` MCP tool. Only run this skill when the user explicitly asks for it; never start a sweep as part of another task. Do not use for one-off code review, enforcing formatting a linter already handles, or editing `.ai/rules` files by hand.
io.github.volcengine/OpenViking/openviking-memory
Work with OpenViking, the persistent context database behind this agent's memory. Use it whenever the user refers to earlier sessions or shared history ("like last time", "what did we decide"), asks to remember or forget something, shares files, URLs, or repos worth keeping, or when the task needs context this session does not have — even if nobody says the word "memory". Also use it when the user asks where memories are stored: per project, per folder, or shared between repositories. Covers choosing between context search, find, list search, and grep, reading viking:// URIs, and when (not) to write.
io.github.volcengine/OpenViking/openviking-skills
Find, use, create, install, share, update, and migrate agent skills stored in OpenViking (viking://~/skills and viking://agent/skills). Use it when a search result, or the session's <available-skills> list where the harness injects one, names a skill that fits the task; when a task looks like one a stored skill would cover; when the user asks to write, save, install, or share a skill from text, a Git repository, or a local folder; when a skill should work in every harness and on every machine; or when the user wants to move local skills (~/.claude/skills, ~/.agents/skills, ~/.cursor/skills) into OpenViking — "upload my skills", "save this as a skill", "迁移本地 skill", "把 skill 存到 OpenViking", "新建一个 skill". Covers the add_skill tool, running a skill's helper files, and which local skills must stay local.
io.github.affaan-m/ECC/code-tour
Create CodeTour `.tour` files — persona-targeted, step-by-step walkthroughs with real file and line anchors. Use for onboarding tours, architecture walkthroughs, PR tours, RCA tours, and structured "explain how this works" requests. Use when the user asks for a code tour, onboarding walkthrough, PR tour, or an explanation of how a subsystem works.
io.github.affaan-m/ECC/git-workflow
Git workflow patterns including branching strategies, commit conventions, keeping history clean and readable, tidying local commits before merging, merge vs rebase, conflict resolution, and collaborative development best practices for teams of all sizes. Use when choosing a branching strategy, writing commit conventions, cleaning up history before a pull request, deciding merge versus rebase, or resolving conflicts.
io.github.affaan-m/ECC/living-docs-governance
Keep a long-lived project's documentation from rotting by assigning existing project docs clear constitution, map, status, and history roles, then wiring the active agent harness to those canonical sources. Use in the maintain phase when docs drift from code, agents lose context between sessions, or intentional removals keep being recreated. Prefer adopting the repository's current docs structure over creating new root files. 中文触发:文档治理、活文档、项目状态追踪、防文档漂移、项目地图、健康仪表盘、删除区、长期项目治理
io.github.affaan-m/ECC/architecture-decision-records
Capture architectural decisions as numbered ADR markdown files in docs/adr/ with context, alternatives considered, consequences, and an index README. Use when the user says 'record this decision' or 'ADR this', chooses between frameworks or databases, discusses trade-offs, or asks why the codebase is shaped this way.
io.github.ruvnet/ruflo/remember-team-context
Store and retrieve approved tenant-local team context with RuVector-backed isolation and provenance.
io.github.affaan-m/ECC/i18n-sync
Translate and synchronize application JSON locale files using source-key usage, project terminology, and focused validation. Use when adding keys or languages, updating source copy, or reviewing missing and stale translations.
io.github.n8n-io/n8n/nathan
通过内部 Nathan 机器人从仓库(而非 Slack)部署临时的 n8n 测试实例,或生成一条本地 docker 运行命令。在开 PR 后向用户提供可实时测试的实例,或用户要求为某分支搭建/部署测试实例时使用。
io.github.affaan-m/ECC/homelab-network-readiness
Readiness checklist for homelab VLAN segmentation, local DNS filtering (Pi-hole, AdGuard Home), and WireGuard-style remote access. Use when planning or reviewing home network changes — splitting a flat network into trusted, IoT, guest, or management VLANs, moving DHCP to a local resolver, or adding VPN access — before changing router, firewall, DHCP, or VPN configuration.
io.github.affaan-m/ECC/recursive-decision-ledger
Run repeated rollouts ("Prime Gauss" style recursive prompting) while keeping an append-only decision ledger of trials, marks, coherence checks, and promotion gates, so recursive confidence never auto-approves live trading, deploy, or destructive actions. Use when the user asks for repeated rollouts, marked decision processes, high-dimensional search, stochastic optimization, local-optima exploration, ensemble comparison, or recursive reasoning with a visible evidence trail.
io.github.affaan-m/ECC/videodb
Ingest, index, search, edit, and monitor video and audio with the VideoDB Python SDK — upload from files, URLs, or RTSP feeds, build spoken and scene indexes with timestamped search and playable clips, transcode and reframe, do timeline edits (subtitles, overlays, dubbing), and run real-time alerts on live streams or desktop capture. Use when working with video search, transcription, clipping, transcoding, streaming, or live video alerts.
io.github.affaan-m/ECC/architecture-decision-records
将 Claude Code 会话中做出的架构决策捕获为结构化 ADR。自动检测决策时刻,记录上下文、考虑的替代方案与理由。维护 ADR 日志,帮助后来的开发者理解代码库为何如此构建。
io.github.affaan-m/ECC/flox-environments
使用 Flox(声明式的 Nix 环境管理器)创建可复现的跨平台(macOS/Linux)开发环境。适用于为任意语言设置项目工具链、安装系统级依赖(编译器、数据库、openssl/BLAS 等本地库)、为团队锁定精确的包版本、运行本地服务(PostgreSQL、Redis、Kafka)、一条命令完成开发者入职,或解决“在我机器上没问题”类问题——包括需要项目级工具且无需 sudo 的智能体/vibe-coding 场景。用户提及 .flox/、manifest.toml、flox activate 或 FloxHub 时同样适用。
io.github.affaan-m/ECC/git-workflow
Git 工作流模式,包括分支策略、提交约定、合并与变基的取舍、冲突解决,以及适用于各种规模团队的协作开发最佳实践。当需要选择分支策略、制定提交约定、决定用 merge 还是 rebase,或解决冲突时使用。
io.github.wekan/wekan/migrate-to-rspack
Use when migrating an existing Meteor app to Rspack (Meteor 3.4+), or upgrading Rspack 1 to 2 on Meteor 3.6 beta. Triggers on nested imports, mainModule entry points, server-only apps, replacing fourseven:scss / meteor/less / coffeescript / jorgenvatle:vite / zodern:melte with loaders, Svelte/TypeScript preprocessing or Lingui SWC plugin failures after upgrade, CommonJS default-import interop, module.exports in client graphs, Node built-ins in browser code, _build / build-assets / build-chunks, .meteorignore hiding handoff files, dynamic chunks under ROOT_URL, meteor.modules for CSS/HTML, resolve.symlinks or resolve.alias migration, automatic dependency updates and immutable CI/Docker builds. Use this skill when the user asks about migration compatibility or a build plugin's Rspack replacement. For new-app setup and rspack.config.js helpers, use meteor-modern-build-stack instead.
io.github.code-yeongyu/oh-my-openagent/codex-qa
对 omo Codex Light 版(lazycodex / packages/omo-codex)本身做 QA,采用严格隔离,只测试我们自己的插件、绝不触及用户真实的 ~/.codex。一方方法用真实的 codex app-server,配合隔离的 CODEX_HOME 与本地 mock model(不调用真实 API),通过断言 hook/started 与 hook/completed 通知来证明插件钩子已触发。此外还提供:隔离的安装验证、逐组件钩子探测、基于 tmux 的 TUI 冒烟测试,以及运行时日志观察(RUST_LOG / logs SQLite / /debug-config)。自带经测试的辅助脚本,每个都有 --self-test。凡改动 packages/omo-codex 下任何内容,或想对 Codex 插件(钩子/组件、installer/config.toml、app-server 流程、Codex TUI)做 QA、冒烟测试、验证或调试时使用。触发词:codex qa、qa codex、codex-qa、test codex plugin、verify codex hook、codex app-server、lazycodex qa、isolated CODEX_HOME、prove codex hook fired、codex tui test。
io.github.stablyai/orca/computer-use
通过 orca computer 对可见的本地应用窗口进行 OS/窗口级检视与输入:原生应用、外部浏览器窗口(Chrome、Edge、Safari)和应用 webview。不适用于 Orca 内置浏览器(用 orca-cli)或纯页面自动化(用 Playwright 或 CDP)。
io.github.elie222/inbox-zero/cloud-dev-environment
用于本地开发的 Cursor Cloud VM 配置与服务启动说明。
io.github.supabase/supabase/test-the-docs
在一次性的 Docker Compose 沙箱(runner 容器 + 通过 supabase start 启动的本地 Supabase 栈)里执行文档中可运行的代码片段与示例。在 Draft 之后或 Self-review 期间,被要求测试文档、对 CLI/SQL/代码样例做事实核查或为文档 PR 产出验证报告时使用。作为 review-the-docs 的 lint/build 检查的补充而非替代。
io.github.github/awesome-copilot/api-breaking-change-detector
Cross-references C# Web API controllers/DTOs against their TypeScript/JavaScript consumers (React, Angular, Vue, Svelte, Node.js, or hand-written/auto-generated HTTP clients like Fetch, Axios, NSwag) to catch contract drift in both directions: backend changes that break client applications (renamed/removed JSON keys, new required parameters, status code shifts) and frontend code sending fields the backend no longer reads. Works directly against source code, not exported OpenAPI spec files. Use when the user asks to check for breaking API changes, verify frontend/backend contract sync, or audit a DTO/controller change against its TypeScript/JS consumers before merging. Not for generating new API code from a spec (see openapi-to-application-code) or scaffolding new endpoints (see aspnet-minimal-api-openapi).
io.github.NousResearch/hermes-agent/hermes-agent-skill-authoring
编写仓库内的 SKILL.md 文件:frontmatter 与结构。